Using Checkpoint/Edizon

[tabun]

I recently installed CFW on my Switch to play around with cheats in Pokemon. I launch atmosphere, save my game, do whatever with PkHex/atmosphere cheats, and apply the changes using Edizon's save manager. It's been going fine, no problems at all, been playing around for maybe 6 hours.

However, when I was done playing around, and wanted to play with without launching into atmosphere, my save file is 6 hours behind my atmosphere one. I thought it was an issue with the edizon save editor, so I used Checkpoint too, but got the same results.

So, I'm wondering if these saves files played on while atmosphere is launched are discrete from the ones played without launching? And if there's any way to consolidate the files.

6 hours isn't a huge deal to make up for me, but I figured I'd ask.
Also, I hope this make sense

 

[DorianX]

However, when I was done playing around, and wanted to play with without launching into atmosphere

i am trying to make sense out of that sentence.
nintendo switch games are saved on sys-mem,
but you have a save file on your sd card that you edit to play with cheats.
save data is stored for individual users (profile) . so if you are using one profile to play with cheats and then another profile to play legit then that is your problem.